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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPD2, Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
Sequence ID:NM_177542
NM_004597
Entrez Gene ID:6633
Ensembl ID:ENSG00000125743

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 46190713 - 46195180

 Exon Info From UCSC:
NM_177542
NM_004597

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2819767Full LengthBC000486small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
2819767Full LengthBC001930small nuclear ribonucleoprotein D2 polypeptide 16.5kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004588  NP_808210  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004597 NP_004588 P62316 LSM
NM_177542 NP_808210 P62316 LSM

Related Sequences

 
mRNAGenPeptSwissProt
U15008 AAC13776 P62316
BC000486 AAH00486 P62316
BC001930 AAH01930 P62316
DQ891246 ABM82172  
DQ894432 ABM85358  
AK291912 BAF84601 P62316

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPD2 NP_004588 M.musculus Snrpd2 107686 Gene Info NP_081219 100
R.norvegicus Snrpd2 680309   NP_001102869 100
A.gambiae AgaP_AGAP003936 1278762   XP_318388 90
D.melanogaster SmD2 40781   NP_649645 90
C.elegans snr-4 179639   NP_506004 82
A.thaliana AT3G62840 825459   NP_567134 81
A.thaliana AT2G47640 819377   NP_001078076 81
S.pombe smd2 2542480   NP_594506 69
N.crassa NCU03778 3877258   XP_961124 66
S.cerevisiae SMD2 850981   NP_013377 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta