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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL22, ribosomal protein L22
Sequence ID:NM_000983
Entrez Gene ID:6146
Ensembl ID:ENSG00000116251

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 6245079 - 6246627

NM_000983 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16181162450806246875
1812193662529896253113
1937204162577116257815
2042209962596216259678

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5109124Full LengthBC035566ribosomal protein L22
5303658Full LengthBC066314ribosomal protein L22
6141451Full LengthBC058887ribosomal protein L22
3834726IncompleteBC011829ribosomal protein L22
3836024IncompleteBC020237ribosomal protein L22
3921971IncompleteBC032295ribosomal protein L22

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000974  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000983 NP_000974 P35268 Ribosomal_L22e

Related Sequences

 
mRNAGenPeptSwissProt
BC035566 AAH35566 P35268
BC058887 AAH58887 P35268
BC066314 AAH66314 P35268
D17652 BAA04545 P35268
AK311749 BAG34692 P35268
X59357 CAA42007 P35268
CR456873 CAG33154 P35268

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL22 NP_000974 M.musculus Rpl22 19934 Gene Info NP_033105 99
R.norvegicus Rpl22 81768   NP_112366 98
A.thaliana AT3G05560 819722   NP_001078112 67
A.thaliana AT5G27770 832839   NP_198129 66
D.melanogaster RpL22 31022   NP_477134 64
A.gambiae AgaP_AGAP005046 1274727   XP_313917 59
C.elegans rpl-22 173873   NP_494932 58
S.pombe rpl22 2543021   NP_594940 53
N.crassa NCU06661 3877064   XP_960908 48
S.cerevisiae RPL22A 850750   NP_013162 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)