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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LSM4, LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_012321
NM_001252129
Entrez Gene ID:25804
Ensembl ID:ENSG00000130520

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 18417716 - 18433958

Transcript StartTranscript EndChromosomal Start Chromosomal End
216681841771718418364
6698521842048718420670
8539511842341318423511
9529931842683318426874
99411671843382718434000

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821171Full LengthBC000387LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
3534432Full LengthBC022198LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
3536946Full LengthBC003652LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
5015049Full LengthBC023665LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036453  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001252129 NP_001239058    
NM_012321 NP_036453 Q9Y4Z0 LSM

Related Sequences

 
mRNAGenPeptSwissProt
AF182290 AAD56228 Q9Y4Z0
AF117235 AAF17216 Q9Y4Z0
AF251218 AAF90055 Q9Y4Z0
BC000387 AAH00387 Q9Y4Z0
BC003652 AAH03652 Q9Y4Z0
BC022198 AAH22198 Q9Y4Z0
BC023665 AAH23665 Q9Y4Z0
EU832756 ACE87088  
EU832676 ACE87767  
AJ238096 CAB45867 Q9Y4Z0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM4 NP_036453 M.musculus Lsm4 50783 Gene Info NP_056631 97
R.norvegicus Lsm4 290647   NP_001099543 97
A.thaliana emb1644 832834   NP_198124 75
A.gambiae AgaP_AGAP009687 1279076   XP_318746 74
D.melanogaster CG17768 3772012   NP_001188778 73
C.elegans lsm-4 174193   NP_495514 70
P.falciparum PF11_0524 810633   XP_001347757 60
N.crassa NCU07683 3878464   XP_962325 59
S.pombe lsm4 2540475   NP_596279 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)