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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC1A6, solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
Sequence ID:NM_005071
Entrez Gene ID:6511
Ensembl ID:ENSG00000105143

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 15074820 - 15086858

NM_005071 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12121506099015061201
2133471506373915063873
3485421506494615065140
5437761506728715067520
77711201507281315073156
112111631507513015075172
116413681507911415079318
136915061508254815082685
150717191508351715083729

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5269300Full LengthBC028721solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
5270965Full LengthBC040604solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005062  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005071 NP_005062 P48664 SDF

Related Sequences

 
mRNAGenPeptSwissProt
U18244 AAA75314 P48664
BC028721 AAH28721 Q8N753
BC040604 AAH40604 Q8N753
AB209199 BAD92436 Q59GB0
AK302380 BAH13691 B7Z7Q5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC1A6 NP_005062 M.musculus Slc1a6 20513 Gene Info NP_033226 96
R.norvegicus Slc1a6 84012   NP_114454 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)