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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CALR, Calreticulin
Sequence ID:NM_004343
RefSeqGene ID:NG_029662
Entrez Gene ID:811
Ensembl ID:ENSG00000179218

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3-p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 13049493 - 13054724

NM_004343 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11711304941313049583
1722731304994713050048
2744771305024113050444
4785721305086613050960
5737821305105613051265
7838961305135413051467
89710401305155713051700
104111331305435013054442
113419111305452613055303

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3050717Full LengthBC002500calreticulin
3898550Full LengthBC020493calreticulin
4299303Full LengthBC007911calreticulin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004334  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004343 NP_004334 P27797 Calreticulin

Related Sequences

 
mRNAGenPeptSwissProt
M32294 AAA36582 P27797
M84739 AAA51916 P27797
BC002500 AAH02500 P27797
BC007911 AAH07911 P27797
BC020493 AAH20493 P27797
AY047586 AAL13126 P27797
BT007448 AAP36116 P27797
AK223060 BAD96780 Q53G71
AK295230 BAG58223 B4DHR1
AK304492 BAG65301 B4E2Y9
AB451408 BAG70222 P27797
CR457070 CAG33351 P27797

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CALR NP_004334 M.musculus Calr 12317 Gene Info NP_031617 94
R.norvegicus Calr 64202   NP_071794 94
A.gambiae AgaP_AGAP004212 1274052   XP_313116 67
D.melanogaster Crc 41166   NP_524293 67
C.elegans crt-1 178997   NP_504575 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta