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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP5F1, ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
Sequence ID:NM_001688
Entrez Gene ID:515
Ensembl ID:ENSG00000116459

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 111992117 - 112003951

NM_001688 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1461111991742111992202
462498111992458111992494
499644111996832111996977
645808111998707111998870
809934111999251111999376
9351114112002078112002257
11152099112003538112004522

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3839745Full LengthBC005366ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
4049491Full LengthBC005960ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
4074170Full LengthBC016350ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001679  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001688 NP_001679 P24539 Mt_ATP-synt_B

Related Sequences

 
mRNAGenPeptSwissProt
BC005366 AAH05366 P24539
BC005960 AAH05960 P24539
BC016350 AAH16350 P24539
AY871272 AAX11428 Q08ET0
D28383 BAA05749  
AK223018 BAD96738 Q53GB3
AK291077 BAF83766 A8K4W2
AK313541 BAG36318 Q08ET0
X60221 CAA42782 P24539

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP5F1 NP_001679 M.musculus Atp5f1 11950 Gene Info NP_033855 83
R.norvegicus Atp5f1 171375   NP_599192 82
D.melanogaster ATPsyn-b 39143   NP_524011 47
A.gambiae AgaP_AGAP001138 1282029   XP_322024 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)