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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GALNT1, UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
Sequence ID:NM_020474
Entrez Gene ID:2589
Ensembl ID:ENSG00000141429

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 33272160 - 33289734

 Exon Info From UCSC:
NM_020474

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4478643Full LengthBC038440UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065207  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_020474 NP_065207 Q10472 EC 2.4.1.41 Glycos_transf_2
Ricin_B_lectin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U41514 AAC50327 Q10472 EC 2.4.1.41
BC038440 AAH38440 Q05BM8  
BC047746 AAH47746 Q10472 EC 2.4.1.41
AK293062 BAF85751 A8KAJ7  
X85018 CAA59380 Q10472 EC 2.4.1.41
AJ505952 CAD44535 Q68VJ7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GALNT1 NP_065207 R.norvegicus Galnt1 79214   NP_077349 99
M.musculus Galnt1 14423 Gene Info NP_001153876 98
A.gambiae AgaP_AGAP008613 1275461   XP_314708 67
D.melanogaster pgant5 326151   NP_001036338 66
C.elegans gly-3 176112   NP_498722 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)