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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHMP6, charged multivesicular body protein 6
Sequence ID:NM_024591
Entrez Gene ID:79643
Ensembl ID:ENSG00000176108

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 78965702 - 78973931

NM_024591 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11417896564078965780
1422517896838078968489
2523397896881878968905
3404267896947178969557
4274927897080678970871
4935737897106078971140
5746287897216578972219
62916637897289778973931

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3604039Full LengthBC010108chromatin modifying protein 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078867  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024591 NP_078867 Q96FZ7 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
BC010108 AAH10108 Q96FZ7
AY329087 AAQ91196 Q96FZ7
HQ448670 ADQ33148  
AK021811 BAB13901 Q96FZ7
AK223187 BAD96907 Q96FZ7
AK292105 BAF84794 Q96FZ7
CR457284 CAG33565 Q96FZ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHMP6 NP_078867 R.norvegicus Chmp6 287873   NP_001099326 94
M.musculus Chmp6 208092 Gene Info NP_001078967 93
A.gambiae AgaP_AGAP006229 1276890   XP_316297 58
D.melanogaster Vps20 37581   NP_726213 54
C.elegans Y65B4A.3 171654   NP_490762 48
A.thaliana VPS20.1 836508   NP_001190610 38
S.pombe vps20 2540725   NP_596691 38
A.thaliana VPS20.2 830785   NP_196488 38
S.cerevisiae VPS20 855101   NP_013794 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)