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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. JMJD6, jumonji domain containing 6
Sequence ID:NM_001081461
NM_015167
Entrez Gene ID:23210
Ensembl ID:ENSG00000070495

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 74708918 - 74722563

 Exon Info From UCSC:
NM_001081461
NM_015167

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6064429Full LengthBC066654jumonji domain containing 6
3913852IncompleteBC047003jumonji domain containing 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055982  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001081461 NP_001074930    
NM_015167 NP_055982   JmjC

Related Sequences

 
mRNAGenPeptSwissProt
BC047003 AAH47003 Q6NYC1
BC066654 AAH66654 Q6NYC1
EF527406 ABU68576 B2WTI3
EF527407 ABU68577 B2WTI4
AB011157 BAA25511 Q6NYC1
AB073711 BAC16755 Q6NYC1
AK021780 BAG51050 Q6NYC1
AK294816 BAG57932 Q6NYC1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens JMJD6 NP_001074930 R.norvegicus Jmjd6 360665   NP_001012143 98
M.musculus Jmjd6 107817 Gene Info NP_203971 98
D.melanogaster PSR 42616   NP_651026 71
A.gambiae AgaP_AGAP000158 1272104   XP_310981 68
C.elegans psr-1 177229   NP_001040940 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)