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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SF3B3, splicing factor 3b, subunit 3, 130kDa
Sequence ID:NM_012426
Entrez Gene ID:23450
Ensembl ID:ENSG00000189091

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 70557745 - 70606420

 Exon Info From UCSC:
NM_012426

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6168677Full LengthBC068974splicing factor 3b, subunit 3, 130kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036558  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012426 NP_036558 Q15393 CPSF_A

Related Sequences

 
mRNAGenPeptSwissProt
BC000463 AAH00463 Q15393
BC003146 AAH03146 Q15393
BC009780 AAH09780 Q15393
BC068974 AAH68974 Q15393
JF432652 ADZ15869  
D13642 BAA02805 Q15393
D87686 BAA32662 Q15393
AK291768 BAF84457 A8K6V3
AK001297 BAG50889 B3KM77
AK074933 BAG52033 B3KQH1
AL110251 CAB53699 Q15393
AJ001443 CAB56791 Q15393

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SF3B3 NP_036558 M.musculus Sf3b3 101943 Gene Info NP_598714 100
R.norvegicus Sf3b3 292019   XP_214697 100
A.gambiae AgaP_AGAP005549 1276233   XP_315551 78
D.melanogaster CG13900 38093   NP_728546 76
C.elegans tag-203 172406   NP_491953 62
A.thaliana AT3G55200 824686   NP_567015 59
A.thaliana AT3G55220 824688   NP_567016 59
N.crassa NCU00396 3873404   XP_957282 51
S.pombe prp12 2543278   NP_594414 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)