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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VAT1, Vesicle amine transport protein 1 homolog (T. californica)
Sequence ID:NM_006373
Entrez Gene ID:10493
Ensembl ID:ENSG00000108828

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 41166623 - 41174380

NM_006373 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
115404116662141168160
154117824116832341168564
178318724116985741169946
187320434117005241170222
204422514117060841170815
225227584117395241174458

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3162543Full LengthBC008725vesicle amine transport protein 1 homolog (T. californica)
3834206Full LengthBC014279vesicle amine transport protein 1 homolog (T. californica)
3919901Full LengthBC015041vesicle amine transport protein 1 homolog (T. californica)
6528247Full LengthBC090858vesicle amine transport protein 1 homolog (T. californica)
3547155IncompleteBC001913vesicle amine transport protein 1 homolog (T. californica)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006364  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006373 NP_006364 Q99536 ADH_zinc_N
ADH_N

Related Sequences

 
mRNAGenPeptSwissProt
U25779 AAA93230 Q16464
U18009 AAA95990 Q99536
BC001913 AAH01913 Q99536
BC008725 AAH08725 Q99536
BC014279 AAH14279 Q99536
BC015041 AAH15041 Q99536
BC090858 AAH90858 Q99536
BT007369 AAP36033 Q99536
HQ258013 ADR82767  
AK290460 BAF83149 Q99536
AK315838 BAF98729 B0AZP7
AK097072 BAG53420 B3KUF8
AK298536 BAG60736 B4DPX4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAT1 NP_006364 M.musculus Vat1 26949 Gene Info NP_036167 91
R.norvegicus Vat1 287721   NP_001028855 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)