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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDF2, stromal cell-derived factor 2
Sequence ID:NM_006923
NR_045585
Entrez Gene ID:6388
Ensembl ID:ENSG00000132581

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 26987505 - 26988922

NM_006923 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
26882697560726976293
6898852698230426982500
88610752698874326988932

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821329Full LengthBC000500stromal cell-derived factor 2
3140716Full LengthBC001406stromal cell-derived factor 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_008854  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006923 NP_008854 Q99470
Q6IBU4
MIR

Related Sequences

 
mRNAGenPeptSwissProt
BC000500 AAH00500 Q99470
Q6IBU4
BC001406 AAH01406 Q99470
Q6IBU4
BT006709 AAP35355 Q6IBU4
DQ891990 ABM82916  
DQ895180 ABM86106  
D50645 BAA09312 Q99470
CR456708 CAG32989 Q99470
Q6IBU4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDF2 NP_008854 M.musculus Sdf2 20316 Gene Info NP_033169 95
R.norvegicus Sdf2 287470   NP_001099273 95
D.melanogaster CG11999 40637   NP_649527 55
A.gambiae AgaP_AGAP001749 1281425   XP_321335 54
C.elegans R12E2.13 172010   NP_491320 51
A.thaliana SDF2 817049   NP_565585 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)