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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BCKDK, branched chain ketoacid dehydrogenase kinase
Sequence ID:NM_001122957
NM_005881
Entrez Gene ID:10295
Ensembl ID:ENSG00000103507

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 31119747 - 31123921

 Exon Info From UCSC:
NM_001122957
NM_005881

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3630050Full LengthBC007363branched chain ketoacid dehydrogenase kinase
3944953Full LengthBC009872branched chain ketoacid dehydrogenase kinase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005872  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001122957 NP_001116429      
NM_005881 NP_005872 O14874 EC 2.7.11.4 HATPase_c

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF026548 AAB82714 O14874 EC 2.7.11.4
BC007363 AAH07363 O14874 EC 2.7.11.4
BC009872 AAH09872 Q96G95  
DQ893687 ABM84613    
DQ896864 ABM87863    
AK294691 BAG57850 B4DGN9  
CR542093 CAG46890 O14874 EC 2.7.11.4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BCKDK NP_005872 R.norvegicus Bckdk 29603   NP_062117 96
M.musculus Bckdk 12041 Gene Info NP_033869 95
N.crassa NCU04349 3872477   XP_956330 41
S.cerevisiae PKP1 854769   NP_012222 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)