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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL9, ribosomal protein L9
Sequence ID:NM_000661
NM_001024921
RefSeqGene ID:NG_032111
Entrez Gene ID:6133
Ensembl ID:ENSG00000163682

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 39455757 - 39460531

 Exon Info From UCSC:
NM_000661
NM_001024921

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961026Full LengthBC004156ribosomal protein L9
2961026Full LengthBC004206ribosomal protein L9
2964733Full LengthBC000483ribosomal protein L9
4304670Full LengthBC007967ribosomal protein L9
4554838Full LengthBC012149ribosomal protein L9
4996986Full LengthBC031906ribosomal protein L9
5277491Full LengthBC066318ribosomal protein L9
6022858Full LengthBC100285ribosomal protein L9
6605055Full LengthBC070214ribosomal protein L9

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000661 NP_000652 Q53Z07
P32969
Ribosomal_L6
NM_001024921 NP_001020092 Q53Z07
P32969
Ribosomal_L6

Related Sequences

 
mRNAGenPeptSwissProt
U21138 AAA63752 Q53Z07
P32969
U09953 AAB01040 P32969
BC000483 AAH00483 Q53Z07
P32969
BC004156 AAH04156 Q53Z07
P32969
BC004206 AAH04206 Q53Z07
P32969
BC007967 AAH07967 Q53Z07
P32969
BC012149 AAH12149 Q53Z07
P32969
BC031906 AAH31906 Q53Z07
P32969
BC066318 AAH66318 Q53Z07
P32969
BC070214 AAH70214 Q53Z07
P32969
BC100285 AAI00286 Q53Z07
P32969
AY320412 AAP73811 Q53Z07
P32969
AY376242 AAQ82909 Q53Z07
P32969
DQ892727 ABM83653  
DQ892959 ABM83885  
DQ895974 ABM86900  
D14531 BAA03401 Q53Z07
P32969
AB062431 BAB93494 Q53Z07
P32969
AK312241 BAG35174 Q53Z07
AK297178 BAG59670 B4DLV8
AK303908 BAG64837 B4E1M5
AL832047 CAH10410 Q69YS1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL9 NP_000652 M.musculus Rpl9 20005 Gene Info NP_035422 99
A.gambiae AgaP_AGAP009508 1271403   XP_310188 66
D.melanogaster RpL9 34526   NP_477161 66
C.elegans rpl-9 176071   NP_498660 63
A.thaliana AT4G10450 826637   NP_192783 58
A.thaliana AT1G33120 840208   NP_564417 57
A.thaliana PGY2 840211   NP_564418 57
N.crassa NCU02744 3881278   XP_965129 57
P.falciparum PF13_0129 814100   XP_001349971 53
S.pombe rpl901 2543380   NP_593698 53
S.pombe rpl902 2539464   NP_587694 53
S.cerevisiae RPL9B 855658   NP_014332 51
S.cerevisiae RPL9A 852730   NP_011368 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)