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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CSPG4, chondroitin sulfate proteoglycan 4
Sequence ID:NM_001897
Entrez Gene ID:1464
Ensembl ID:ENSG00000173546

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 75967848 - 76005096

NM_001897 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1730787596666375969724
307932627597004375970226
326334297597463375974799
343035647597494775975081
356537637597518375975381
376439407597707675977252
394144237597755975978041
442479607597961675983152
796181247598541075985573
812583057600500876005188

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069270Full LengthBC172576chondroitin sulfate proteoglycan 4
40112128IncompleteBC128110chondroitin sulfate proteoglycan 4
100068964BC172270chondroitin sulfate proteoglycan 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001888  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001897 NP_001888 Q6UVK1 Laminin_G_1
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
BC128110 AAI28111 A2VCL1
BC172270 AAI72270  
BC172576 AAI72576  
AY359468 AAQ62842 Q6UVK1
X96753 CAA65529 Q6UVK1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CSPG4 NP_001888 M.musculus Cspg4 121021 Gene Info NP_620570 84
R.norvegicus Cspg4 81651   NP_112284 83
A.gambiae AgaP_AGAP008400 1277580   XP_317052 28
D.melanogaster kon 35104   NP_609881 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)