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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GTF2A2, general transcription factor IIA, 2, 12kDa
Sequence ID:NM_004492
Entrez Gene ID:2958
Ensembl ID:ENSG00000140307

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q22.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 59931330 - 59949737

NM_004492 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
310965993026259931355
109712235993433459934460
122413285994286759942971
132914495994440459944524
145015825994960459949736

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2819215Full LengthBC000287general transcription factor IIA, 2, 12kDa
2819215Full LengthBC001919general transcription factor IIA, 2, 12kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004483  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004492 NP_004483 P52657 TFIIA_gamma_N
TFIIA_gamma_C

Related Sequences

 
mRNAGenPeptSwissProt
U14193 AAA64951 P52657
U21242 AAB58247 P52657
BC000287 AAH00287 P52657
BC001919 AAH01919 P52657
BT007362 AAP36026 P52657
DQ891245 ABM82171  
DQ894431 ABM85357  
AK312015 BAG34953 B2R506
X81713 CAA57357 P52657
CR542192 CAG46989 P52657

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GTF2A2 NP_004483 M.musculus Gtf2a2 235459 Gene Info NP_001034608 99
R.norvegicus Gtf2a2 83828   NP_445797 99
D.melanogaster TfIIA-S 42822   NP_524467 79
A.gambiae AgaP_AGAP004370 1274516   XP_313653 76
A.thaliana AT4G24440 828546   NP_194175 52
N.crassa NCU09748 3880590   XP_964450 50
C.elegans Y111B2A.13 176682   NP_499644 49
S.pombe SPCC553.11c 2538859   NP_587763 47
S.cerevisiae TOA2 853807   NP_012865 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)