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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS25, ribosomal protein S25
Sequence ID:NM_001028
Entrez Gene ID:6230
Ensembl ID:ENSG00000118181

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118886554 - 118889052

NM_001028 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2369118886421118886467
70168118886550118886648
169352118888071118888254
353448118888667118888762
449514118888991118889056

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2905996Full LengthBC004986ribosomal protein S25
3610532Full LengthBC003537ribosomal protein S25
3622031Full LengthBC004294ribosomal protein S25

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001019  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001028 NP_001019 P62851 Ribosomal_S25

Related Sequences

 
mRNAGenPeptSwissProt
M64716 AAA16105 P62851
BC004294 AAH04294 P62851
BC004986 AAH04986 P62851
DQ893042 ABM83968  
DQ896285 ABM87284  
D28369 BAA05735  
AK311883 BAG34824 P62851

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS25 NP_001019 M.musculus Rps25 75617 Gene Info NP_077228 100
R.norvegicus Rps25 122799   NP_001005528 100
A.thaliana AT4G34555 829607   NP_567968 60
A.thaliana AT2G21580 816696   NP_179752 59
A.thaliana AT4G39200 830075   NP_195631 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)