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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. C17orf49, Chromosome 17 open reading frame 49
Sequence ID:NM_001142798
NM_174893
NM_001142799
Entrez Gene ID:124944
Ensembl ID:ENSG00000258315

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 6918100 - 6920815

 Exon Info From UCSC:
NM_001142798
NM_174893
NM_001142799

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5406966Full LengthBC040036chromosome 17 open reading frame 49

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001004333 NP_001004333 Q6P5S7  
NM_001142798 NP_001136270    
NM_001142799 NP_001136271    
NM_174893 NP_777553 Q8IXM2  

Related Sequences

 
mRNAGenPeptSwissProt
BC040036 AAH40036 Q8IXM2
BC040148 AAH40148 Q8IXM2
BC051802 AAH51802 Q6P5S7
BC062705 AAH62705 Q6P5S7
BC095436 AAH95436 Q502Z2
HQ448589 ADQ33067  
AK289930 BAF82619 Q6P5S7
AK295795 BAG58615 Q8IXM2
AM746459 CAN89245 Q6P5S7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens C17orf49 NP_001136270 R.norvegicus RGD1308134 287452   NP_001120993 96
M.musculus 0610010K14Rik 104457 Gene Info NP_001171072 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)