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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TUBB3, tubulin, beta 3 class III
Sequence ID:NM_001197181
NM_006086
RefSeqGene ID:NG_027810
Entrez Gene ID:10381
Ensembl ID:ENSG00000258947

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 89989809 - 90002212

Transcript StartTranscript EndChromosomal Start Chromosomal End
11228998974489989865
1232318999897889999086
2323428999987589999985
34317119000113690002504

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823044Full LengthBC000748tubulin, beta 3
2823044Full LengthBC003021tubulin, beta 3
2821278IncompleteBC001678tubulin, beta 3
5276469IncompleteBC047518tubulin, beta 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006077  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001197181 NP_001184110    
NM_006086 NP_006077 Q13509 Tubulin
Tubulin_C

Related Sequences

 
mRNAGenPeptSwissProt
U47634 AAC52035 Q13509
BC000748 AAH00748 Q13509
BC001678 AAH01678 Q9BV28
BC003021 AAH03021 Q13509
BC047518 AAH47518 Q3ZCR3
AF427491 AAL28094 Q13509
AK223039 BAD96759 Q53G92
AK292219 BAF84908 A8K854
AK314616 BAG37182 B2RBD5
AK122757 BAG53710 A8K854

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TUBB3 NP_006077 M.musculus Tubb3 22152 Gene Info NP_075768 100
R.norvegicus Tubb3 246118   NP_640347 100

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)