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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TCF12, Transcription factor 12
Sequence ID:NM_207037
NM_207036
NM_003205
NM_207038
NM_207040
Entrez Gene ID:6938
Ensembl ID:ENSG00000140262

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 57210872 - 57574674

 Exon Info From UCSC:
NM_207037
NM_207036
NM_003205
NM_207038
NM_207040

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5767579Full LengthBC050556transcription factor 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003196  NP_996920  NP_996921  NP_996919  NP_996923  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003205 NP_003196 Q99081 HLH
NM_207036 NP_996919   HLH
NM_207037 NP_996920   HLH
NM_207038 NP_996921 Q99081 HLH
NM_207040 NP_996923   HLH

Related Sequences

 
mRNAGenPeptSwissProt
M80627 AAA58632 Q99081
M83233 AAB62389 Q99081
M65209 AAC37571 Q99081
BC050556 AAH50556 Q99081
EU446662 ABZ92191  
EU832583 ACE86985  
EU832502 ACE87674  
AK294617 BAG57800 B4DGI9
AK294991 BAG58057 B4DH96
AK302749 BAG63962 B4DZ50
AK302923 BAG64087 B4DZH5
AK303028 BAG64154 B4DZP2
AK304007 BAG64923 B4E1W1
AL831981 CAD89914 Q99081
BX537967 CAD97931 Q99081
AM393573 CAL38450  
AM393720 CAL38596  
BK001049 DAA01129 Q99081

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCF12 NP_996919 R.norvegicus Tcf12 25720   NP_037308 96
M.musculus Tcf12 21406 Gene Info NP_035674 96
D.melanogaster da 34413   NP_477189 42
A.gambiae AgaP_AGAP008814 4577964   XP_001237627 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)