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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SQRDL, sulfide quinone reductase-like (yeast)
Sequence ID:NM_001271213
NM_021199
Entrez Gene ID:58472
Ensembl ID:ENSG00000137767

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q15Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 45927255 - 45983479

Transcript StartTranscript EndChromosomal Start Chromosomal End
1514592725545927305
523024595110445951354
3034734595415245954322
4745274596212545962178
5287224596580445965998
7239324596829845968507
93311164597467545974858
111711844598053445980601
118513634598123645981414
136416714598317045983477

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3884024Full LengthBC016836sulfide quinone reductase-like (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067022  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271213 NP_001258142    
NM_021199 NP_067022 Q9Y6N5 Pyr_redox_2

Related Sequences

 
mRNAGenPeptSwissProt
AF151802 AAD34039 Q9Y6N5
AF042284 AAD41160 Q9Y6N5
AF118085 AAF22029 Q9UHS8
BC016836 AAH16836 Q9Y6N5
DQ891446 ABM82372  
DQ894625 ABM85551  
AK222463 BAD96183 Q53HW7
AK313111 BAG35933 B2R7T6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SQRDL NP_067022 R.norvegicus Sqrdl 691966   NP_001041378 90
M.musculus Sqrdl 59010 Gene Info NP_001155975 87
A.gambiae AgaP_AGAP003142 1273816   XP_312834 53
D.melanogaster CG14997 38514   NP_647877 52
C.elegans Y9C9A.16 189421   NP_500688 46
C.elegans sqrd-1 178374   NP_502729 46
N.crassa NCU07112 3876411   XP_960273 42
S.pombe hmt2 2540326   NP_596067 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)