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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RTF1, Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
Sequence ID:NM_015138
RefSeqGene ID:NG_027680
Entrez Gene ID:23168
Ensembl ID:ENSG00000137815

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 41709329 - 41773040

 Exon Info From UCSC:
NM_015138

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3909737Full LengthBC015052Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055953  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015138 NP_055953 Q92541 Plus-3

Related Sequences

 
mRNAGenPeptSwissProt
BC015052 AAH15052 Q92541
D87440 BAA13382 Q92541
AK292302 BAF84991 I7GPQ7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RTF1 NP_055953 M.musculus Rtf1 76246 Gene Info NP_084388 98
D.melanogaster Rtf1 37554   NP_611665 48
A.gambiae AgaP_AGAP012057 1280610   XP_320467 42
C.elegans F25B3.6 179345   NP_505473 36
S.pombe SPBC651.09c 2541123   NP_595507 33
N.crassa NCU03956 3873685   XP_957595 29
S.cerevisiae RTF1 852607   NP_011270 28
A.thaliana VIP5 842395   NP_176299 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)