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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC12A6, solute carrier family 12 (potassium/chloride transporters), member 6
Sequence ID:NM_001042494
NM_001042495
NM_001042496
NM_001042497
NM_005135
NM_133647
RefSeqGene ID:NG_007951
Entrez Gene ID:9990
Ensembl ID:ENSG00000140199

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
AGENESIS OF THE CORPUS CALLOSUM WITH PERIPHERAL NEUROPATHY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:15q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:15: 34525460 - 34629045

 Exon Info From UCSC:
NM_001042494
NM_001042495
NM_001042496
NM_001042497
NM_005135
NM_133647

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4826538Full LengthBC070107solute carrier family 12 (potassium/chloride transporters), member 6
4829214Full LengthBC051744solute carrier family 12 (potassium/chloride transporters), member 6
8991957Full LengthBC126241solute carrier family 12 (potassium/chloride transporters), member 6
8991959Full LengthBC126243solute carrier family 12 (potassium/chloride transporters), member 6
40133127IncompleteBC150584solute carrier family 12 (potassium/chloride transporters), member 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005126  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042494 NP_001035959    
NM_001042495 NP_001035960    
NM_001042496 NP_001035961    
NM_001042497 NP_001035962    
NM_005135 NP_005126   AA_permease
KCl_Cotrans_1
NM_133647 NP_598408 Q9UHW9  

Related Sequences

 
mRNAGenPeptSwissProt
AF108831 AAD25337 Q9UHW9
AF105366 AAD39742 Q9UHW9
AF116242 AAF24986 Q9UHW9
BC051744 AAH51744 Q3ZCQ6
BC070107 AAH70107 Q6NSI7
BC126241 AAI26242 Q9UHW9
BC126243 AAI26244 Q9UHW9
BC150584 AAI50585 A7E2U9
AF477977 AAL85335 Q9UHW9
AF531258 AAQ10026 Q9UHW9
AF531259 AAQ10027 Q9UHW9
AF531260 AAQ10028 Q9UHW9
DQ138323 ABA02873 Q9UHW9
AK292550 BAF85239 A8K935
AK315283 BAG37692 Q9UHW9
AK128133 BAG54635 B3KXX3
AL117500 CAB55965 Q9UHW9
BX648195 CAI46042 Q5HYC7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC12A6 NP_598408 M.musculus Slc12a6 107723 Gene Info NP_598410 98
R.norvegicus Slc12a6 691209   NP_001103100 98
C.elegans kcc-1 177495   NP_501141 47
C.elegans kcc-3 174212   NP_495555 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)