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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SETD3, SET domain containing 3
Sequence ID:NM_032233
NM_199123
Entrez Gene ID:84193
Ensembl ID:ENSG00000183576

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q32.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 99864378 - 99932066

 Exon Info From UCSC:
NM_032233
NM_199123

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860450Full LengthBC142995SET domain containing 3
3867655IncompleteBC009054SET domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115609  NP_954574  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_032233 NP_115609 Q86TU7 EC 2.1.1.43 SET
NM_199123 NP_954574     SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC009054 AAH09054 Q86TU7 EC 2.1.1.43
BC066931 AAH66931 Q6NXR6  
BC120967 AAI20968 Q86TU7 EC 2.1.1.43
BC120968 AAI20969 Q86TU7 EC 2.1.1.43
BC127624 AAI27625 Q86TU7 EC 2.1.1.43
BC127625 AAI27626 Q86TU7 EC 2.1.1.43
BC142995 AAI42996 Q86TU7 EC 2.1.1.43
BC148251 AAI48252 Q86TU7 EC 2.1.1.43
AK026680 BAB15525 Q86TU7 EC 2.1.1.43
AK302882 BAG64060 Q86TU7 EC 2.1.1.43
BX161441 CAD61911 Q86TU7 EC 2.1.1.43
BX161471 CAD61927 Q86TU7 EC 2.1.1.43
AL359581 CAH56365 Q86TU7 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SETD3 NP_115609 M.musculus Setd3 52690 Gene Info NP_082538 93
D.melanogaster CG32732 31638   NP_727144 37
C.elegans set-27 190607   NP_497604 33
A.thaliana AT1G14030 837964   NP_172856 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)