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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP43, nucleoporin 43kDa
Sequence ID:NM_024647
NM_198887
Entrez Gene ID:348995
Ensembl ID:ENSG00000120253

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 150047553 - 150067641

Transcript StartTranscript EndChromosomal Start Chromosomal End
172892150045458150048333
28933015150052748150052870
30163167150057606150057757
31683303150059778150059913
33043484150063525150063705
34853562150064773150064850
35633685150067075150067197
36863862150067511150067687

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6042215Full LengthBC065028nucleoporin 43kDa
5270277IncompleteBC047539nucleoporin 43kDa
5297868IncompleteBC046637nucleoporin 43kDa
5552687IncompleteBC040121nucleoporin 43kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_942590  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_198887 NP_942590 Q8NFH3 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC040121 AAH40121 A0PJK4
BC065028 AAH65028 Q8NFH3
AF514997 AAM76708 Q8NFH3
AK023349 BAB14536 Q8NFH3
AK074311 BAB85046 Q8TEA6
AK095994 BAG53192 B3KTT0
AK301027 BAG62643 B4DVD1
AK304244 BAG65112 B4E2F0
AK304505 BAG65313 B4E301
AM392678 CAL37556  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP43 NP_942590 M.musculus Nup43 69912 Gene Info NP_663752 94
D.melanogaster CG7671 42209   NP_650716 29
A.gambiae AgaP_AGAP000480 1271759   XP_310612 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)