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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ERGIC1, Endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Sequence ID:NM_001031711
Entrez Gene ID:57222
Ensembl ID:ENSG00000113719

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q35.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 172261277 - 172379239

NM_001031711 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1214172261222172261435
215276172315701172315762
277349172324004172324076
350444172336669172336763
445569172341716172341840
570674172351007172351111
675735172353511172353571
736836172359438172359538
837959172362190172362312
9602931172377711172379682

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3677787Full LengthBC012766endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
4907240Full LengthBC014490endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001031711 NP_001026881 Q969X5  

Related Sequences

 
mRNAGenPeptSwissProt
AF267855 AAG44724 Q969X5
BC012766 AAH12766 Q969X5
BC014490 AAH14490 Q969X5
AB033007 BAA86495 Q969X5
AK303453 BAG64498 B4E0N6
AL136753 CAB66687 Q969X5
CR533474 CAG38505 Q969X5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ERGIC1 NP_001026881 M.musculus Ergic1 67458 Gene Info NP_080446 99
R.norvegicus Ergic1 287177   XP_001066818 98
C.elegans Y102A11A.6 180517   NP_508375 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)