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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL4A2, collagen, type IV, alpha 2
Sequence ID:NM_001846
RefSeqGene ID:NG_032137
Entrez Gene ID:1284
Ensembl ID:ENSG00000134871

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
PORENCEPHALY 2 
STROKE, HEMORRHAGICACE

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 111158814 - 111164538

 Exon Info From UCSC:
NM_001846

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5424128IncompleteBC080644collagen, type IV, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001837  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001846 NP_001837 P08572 Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
M24766 AAA52043 P08572
J02760 AAA58422 P08572
AF258350 AAF72631 P08572
BC080644 AAH80644 P08572
AF400430 AAK92479 P08572
AY455978 AAR18250 P08572
AY450357 AAR20245 P08572
AK294920 BAG58004 B4DH43
X05562 CAA29076 P08572
X05610 CAA29098 P08572

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL4A2 NP_001837 R.norvegicus Col4a2 306628   XP_225043 85
M.musculus Col4a2 12827 Gene Info NP_034062 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta