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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC15A4, solute carrier family 15, member 4
Sequence ID:NM_145648
Entrez Gene ID:121260
Ensembl ID:ENSG00000139370

Database Links

UniGeneEntrez GeneEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 129277743 - 129299504

NM_145648 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11163129277738129278900
11641322129283803129283961
13231478129285398129285553
14791647129293332129293500
16481725129293940129294017
17261894129294487129294655
18952190129299319129299614
21912789129307942129308540

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860317Full LengthBC146803solute carrier family 15, member 4
4820163IncompleteBC028394solute carrier family 15, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663623  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145648 NP_663623 Q8N697 PTR2

Related Sequences

 
mRNAGenPeptSwissProt
BC028394 AAH28394 Q8N697
BC146803 AAI46804 Q8N697
AY038999 AAK72099 Q8N697
AY050629 AAK95565 Q8N697
AF461893 AAQ04807 Q8N697
AK095717 BAG53113 Q8N697

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC15A4 NP_663623 R.norvegicus Slc15a4 246280   NP_653359 90
M.musculus Slc15a4 100561 Gene Info NP_598656 89
A.thaliana AT1G62200 842516   NP_176411 33
A.thaliana AT2G02020 814733   NP_178311 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)