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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HDGF, hepatoma-derived growth factor
Sequence ID:NM_001126050
NM_001126051
NM_004494
Entrez Gene ID:3068
Ensembl ID:ENSG00000143321

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 156711901 - 156722025

 Exon Info From UCSC:
NM_001126050
NM_001126051
NM_004494

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3503321Full LengthBC018991hepatoma-derived growth factor (high-mobility group protein 1-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004485  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001126050 NP_001119522    
NM_001126051 NP_001119523    
NM_004494 NP_004485 P51858 PWWP

Related Sequences

 
mRNAGenPeptSwissProt
BC018991 AAH18991 P51858
DQ893406 ABM84332  
DQ896724 ABM87723  
D16431 BAA03903 P51858
AK292325 BAF85014 A8K8G0
AK315514 BAG37895 B2RDE8
AK096411 BAG53283 B3KU21
AK298342 BAH12761 B7Z525
AK304468 BAH14194 B7Z958

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HDGF NP_004485 R.norvegicus Hdgf 114499   NP_446159 90
M.musculus Hdgf 15191 Gene Info NP_032257 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)