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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCYL2, SCY1-like 2 (S. cerevisiae)
Sequence ID:NM_017988
Entrez Gene ID:55681
Ensembl ID:ENSG00000136021

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 100691907 - 100735501

 Exon Info From UCSC:
NM_017988

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6473586Full LengthBC063798SCY1-like 2 (S. cerevisiae)
3882729IncompleteBC012387SCY1-like 2 (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060458  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017988 NP_060458 Q6P3W7 Pkinase

Related Sequences

 
mRNAGenPeptSwissProt
BC012387 AAH12387 Q6P3W7
BC063798 AAH63798 Q6P3W7
AK000936 BAA91433 Q9NWE9
AK001597 BAA91778 Q6P3W7
AB037781 BAA92598 Q6P3W7
AK024274 BAB14869 Q6P3W7
AK027551 BAB55194 Q6P3W7
AK292980 BAF85669 Q6P3W7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCYL2 NP_060458 R.norvegicus Scyl2 314717   XP_235050 94
M.musculus Scyl2 213326 Gene Info NP_932138 93
D.melanogaster CG1951 43423   NP_651655 48
A.gambiae AgaP_AGAP002142 1269416   XP_308053 42
A.thaliana AT1G22870 838892   NP_173700 33
A.thaliana AT1G71410 843482   NP_177297 30
N.crassa NCU04755 3876435   XP_960288 30
S.pombe ppk32 2541327   NP_595822 29
S.cerevisiae SCY1 852797   NP_011432 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)