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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP2B1, ATPase, Ca++ transporting, plasma membrane 1
Sequence ID:NM_001001323
NM_001682
RefSeqGene ID:NG_029485
Entrez Gene ID:490
Ensembl ID:ENSG00000070961

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 89984206 - 90024306

 Exon Info From UCSC:
NM_001001323
NM_001682

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4420313IncompleteBC015346ATPase, Ca++ transporting, plasma membrane 1
9094444IncompleteBC172868ATPase, Ca++ transporting, plasma membrane 1
9094445IncompleteBC172869ATPase, Ca++ transporting, plasma membrane 1
9094446IncompleteBC172870ATPase, Ca++ transporting, plasma membrane 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001323  NP_001673  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001323 NP_001001323   E1-E2_ATPase
Cation_ATPase_C
Cation_ATPase_N
Hydrolase
NM_001682 NP_001673   E1-E2_ATPase
Cation_ATPase_C
Cation_ATPase_N
Hydrolase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M95541 AAA35999 P20020 EC 3.6.3.8
M95542 AAA36000 P20020 EC 3.6.3.8
U15686 AAA60983 P20020 EC 3.6.3.8
U15687 AAA60984 P20020 EC 3.6.3.8
J04027 AAA74511 P20020 EC 3.6.3.8
S49852 AAB24324 P20020 EC 3.6.3.8
BC015346 AAH15346 Q58F24  
AY740526 AAV41065 Q3L582  
DQ201776 ABG24240 A1X4P7  
AB208896 BAD92133 Q59H63  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP2B1 NP_001673 M.musculus Atp2b1 67972 Gene Info NP_080758 100
R.norvegicus Atp2b1 29598   NP_445763 98
A.thaliana ACA8 835815   NP_851200 45
A.thaliana ACA10 829112   NP_194719 45
A.thaliana ACA9 821671   NP_188755 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)