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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SAMM50, Sorting and assembly machinery component 50 homolog (S. cerevisiae)
Sequence ID:NM_015380
RefSeqGene ID:NG_029057
Entrez Gene ID:25813
Ensembl ID:ENSG00000100347

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 44351348 - 44392409

 Exon Info From UCSC:
NM_015380

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3010765Full LengthBC011681sorting and assembly machinery component 50 homolog (S. cerevisiae)
3635175Full LengthBC007830sorting and assembly machinery component 50 homolog (S. cerevisiae)
4333051Full LengthBC015200sorting and assembly machinery component 50 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056195  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015380 NP_056195 Q9Y512 Bac_surface_Ag

Related Sequences

 
mRNAGenPeptSwissProt
AF151809 AAD34046 Q9Y512
BC007830 AAH07830 Q9Y512
BC011681 AAH11681 Q9Y512
BC015200 AAH15200 Q9Y512
AY189688 AAO85221 Q9Y512
DQ893124 ABM84050  
DQ896401 ABM87400  
AK001087 BAA91498 Q9Y512
AK222657 BAD96377 Q9Y512
AK097015 BAG53408 B3KUE6
AK297770 BAG60116 B4DN54
CR456483 CAG30369 Q9Y512
CU013033 CAK54464  
CU013321 CAK54763  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SAMM50 NP_056195 M.musculus Samm50 68653 Gene Info NP_848729 96
R.norvegicus Samm50 300111   NP_001004241 95
C.elegans gop-3 175723   NP_498119 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)