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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. COPZ1, coatomer protein complex, subunit zeta 1
Sequence ID:NM_001271734
NM_001271735
NM_001271736
NM_016057
NR_073424
Entrez Gene ID:22818
Ensembl ID:ENSG00000111481

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.2-q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 54718926 - 54744661

Transcript StartTranscript EndChromosomal Start Chromosomal End
1555471891054718964
561245473433054734398
1252065473598954736070
2072985473700854737099
2993545473924354739298
3554325474155054741627
4334845474178354741834
4855235474340354743441
52418975474425954745632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3637869Full LengthBC002849coatomer protein complex, subunit zeta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057141  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271734 NP_001258663    
NM_001271735 NP_001258664    
NM_001271736 NP_001258665    
NM_016057 NP_057141 P61923 Clat_adaptor_s

Related Sequences

 
mRNAGenPeptSwissProt
AF151878 AAD34115 P61923
AF161529 AAF29144 P61923
BC002849 AAH02849 P61923
AF086911 AAP97141 P61923
HQ448364 ADQ32844  
AB047848 BAB17659 P61923
AK223188 BAD96908 Q53FU3
AK293377 BAG56889 B4DDX8
AK295325 BAG58302 B4DHZ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPZ1 NP_057141 M.musculus Copz1 56447 Gene Info NP_062791 100
R.norvegicus Copz1 315345   NP_001101587 100
D.melanogaster zetaCOP 39862   NP_648910 64
A.gambiae AgaP_AGAP006522 1277120   XP_316555 63
C.elegans F59E10.3 174675   NP_496338 57
A.thaliana AT1G60970 842388   NP_564767 47
A.thaliana AT3G09800 820138   NP_566358 46
A.thaliana AT4G08520 826411   NP_567337 46
S.cerevisiae RET3 856097   NP_015315 44
S.pombe ret3 2539522   NP_588434 44
N.crassa NCU02538 3881803   XP_965669 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)