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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLDN5, Claudin 5
Sequence ID:NM_001130861
NM_003277
Entrez Gene ID:7122
Ensembl ID:ENSG00000184113

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 19510549 - 19511895

 Exon Info From UCSC:
NM_001130861
NM_003277

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822745Full LengthBC002404claudin 5
2822745Full LengthBC019290claudin 5
5242567Full LengthBC032363claudin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003268  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130861 NP_001124333    
NM_003277 NP_003268 O00501 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
AF000959 AAC51364 O00501
BC002404 AAH02404 O00501
BC019290 AAH19290 O00501
BC032363 AAH32363 O00501
BT007254 AAP35918 O00501
AK222466 BAD96186 Q53HW4
AK092561 BAG52573 O00501
CR456420 CAG30306 O00501
CU012981 CAK54412  
CU013269 CAK54711  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLDN5 NP_001124333 M.musculus Cldn5 12741 Gene Info NP_038833 92
R.norvegicus Cldn5 65131   NP_113889 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)