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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. PSMD4, proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
Sequence ID:NM_002810
NM_153822
RefSeqGene ID:NG_029700
Entrez Gene ID:5710
Ensembl ID:ENSG00000159352

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 151227246 - 151239936

Transcript StartTranscript EndChromosomal Start Chromosomal End
188151227196151227283
89229151234636151234776
230344151236389151236503
345431151237307151237393
432500151237641151237709
501716151237869151238084
717825151238479151238587
826957151238783151238914
9581025151238995151239062
10261329151239648151239951

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820813Full LengthBC002365proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
6285035Full LengthBC072008proteasome (prosome, macropain) 26S subunit, non-ATPase, 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002801  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002810 NP_002801 P55036 UIM

Related Sequences

 
mRNAGenPeptSwissProt
U24704 AAB54057 P55036
U72664 AAB68598 P55036
BC002365 AAH02365 P55036
BC072008 AAH72008 P55036
JF432522 ADZ15739  
AB033605 BAA97581 P55036

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMD4 NP_002801 R.norvegicus Psmd4 83499   NP_112621 99
M.musculus Psmd4 19185 Gene Info NP_032977 96
D.melanogaster Pros54 40388   NP_524204 63
A.gambiae AgaP_AGAP005559 1276242   XP_315562 62
S.cerevisiae RPN10 856607   NP_012070 54
N.crassa NCU02982 3881493   XP_965368 53
C.elegans rpn-10 172977   NP_492809 52
A.thaliana RPN10 830019   NP_195575 49
S.pombe rpn10 2543682   NP_594628 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)