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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ISL1, ISL LIM homeobox 1
Sequence ID:NM_002202
RefSeqGene ID:NG_023040
Entrez Gene ID:3670
Ensembl ID:ENSG00000016082

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q11.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 50679239 - 50689537

NM_002202 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15765067895750679532
5777665068037450680563
76710265068332350683582
102713135068547950685765
131414815068710750687274
148227115068932750690556

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5269369Full LengthBC031213ISL LIM homeobox 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002193  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002202 NP_002193   Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
U07559 AAA81946 P61371
S70721 AAD14064 P61371
BC031213 AAH31213 P61371
DQ891558 ABM82484  
DQ894746 ABM85672  
EU176619 ABW03420  
AK290742 BAF83431 A8K3X7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ISL1 NP_002193 R.norvegicus Isl1 64444   NP_059035 100
M.musculus Isl1 16392 Gene Info NP_067434 100
A.gambiae AgaP_AGAP010209 1279631   XP_319393 68
D.melanogaster tup 35147   NP_476775 67
C.elegans lim-7 172236   NP_491668 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)