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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TAPBPL, TAP binding protein-like
Sequence ID:NM_018009
Entrez Gene ID:55080
Ensembl ID:ENSG00000139192

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6561272 - 6571460

NM_018009 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
130265611766561477
30353365622326562462
53480365626126562881
804114265665716566909
1143144565678106568112
1446152965700206570103
1530181665711996571485

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3916213Full LengthBC015017TAP binding protein-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060479  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018009 NP_060479 Q9BX59 C1-set
V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC015017 AAH15017 Q9BX59
HQ258015 ADR82769  
AK001005 BAA91465 Q9BX59
AK002056 BAB41077 Q9BX59
AK222956 BAD96676 Q53GH5
AK223163 BAD96883 Q53FW8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TAPBPL NP_060479 R.norvegicus Tapbpl 297602   NP_001100092 72
M.musculus Tapbpl 213233 Gene Info NP_663366 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)