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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC6A13, solute carrier family 6 (neurotransmitter transporter, GABA), member 13
Sequence ID:NM_001190997
NM_001243392
NM_016615
Entrez Gene ID:6540
Ensembl ID:ENSG00000010379

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 368523 - 372002

 Exon Info From UCSC:
NM_001190997
NM_016615

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4612245Full LengthBC022392solute carrier family 6 (neurotransmitter transporter, GABA), member 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057699  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001190997 NP_001177926    
NM_001243392 NP_001230321    
NM_016615 NP_057699 Q9NSD5 SNF

Related Sequences

 
mRNAGenPeptSwissProt
U76343 AAF64247 Q9NSD5
BC020867 AAH20867 Q8WW56
BC022392 AAH22392 Q9NSD5
AF462445 AAP97713 Q8WW56
DQ892025 ABM82951  
DQ895217 ABM86143  
AK313511 BAG36291 Q9NSD5
AK295904 BAG58695 B4DJ33
AK296127 BAG58873 Q9NSD5
AK296209 BAG58935 B4DJS3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC6A13 NP_057699 R.norvegicus Slc6a13 171163   NP_598307 92
M.musculus Slc6a13 14412 Gene Info NP_653095 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)