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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CWC15, CWC15 spliceosome-associated protein homolog (S. cerevisiae)
Sequence ID:NM_016403
Entrez Gene ID:51503

Database Links

UniGeneEntrez GeneDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 94696510 - 94706716

NM_016403 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
199099469578894696678
9109579469945994699506
95910289469950794699576
102911369470315294703259
113712259470414094704228
122613389470453894704650
133914779470521894705356
147815929470666194706775

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6067745Full LengthBC040946CWC15 spliceosome-associated protein homolog (S. cerevisiae)
4051771IncompleteBC006975CWC15 spliceosome-associated protein homolog (S. cerevisiae)
5403657IncompleteBC032629CWC15 spliceosome-associated protein homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057487  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016403 NP_057487 Q9P013 Cwf_Cwc_15

Related Sequences

 
mRNAGenPeptSwissProt
AF110775 AAF14858 Q9P013
AF161497 AAF29112 Q9P013
BC006975 AAH06975 Q9P013
BC032629 AAH32629 Q9P013
BC040946 AAH40946 Q9P013
HQ257942 ADR82696  
AK314900 BAG37414 Q9P013
AJ250393 CAB96541 Q9P013

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CWC15 NP_057487 R.norvegicus Cwc15 300361   NP_001020158 100
M.musculus Cwc15 66070 Gene Info NP_075642 99
D.melanogaster c12.1 53435   NP_652605 64
C.elegans T10C6.5 180069   NP_507024 64
A.gambiae AgaP_AGAP010594 1275321   XP_314559 63
A.thaliana EMB2769 820510   NP_566447 50
S.pombe cwf15 2540983   NP_595407 47
N.crassa NCU00335 3873976   XP_957806 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)