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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. FADS1, fatty acid desaturase 1
Sequence ID:NM_013402
Entrez Gene ID:3992
Ensembl ID:ENSG00000149485

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.2-q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 61567680 - 61569455

 Exon Info From UCSC:
NM_013402

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4129208Full LengthBC007846fatty acid desaturase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037534  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013402 NP_037534 O60427 Cyt-b5
FA_desaturase

Related Sequences

 
mRNAGenPeptSwissProt
AF199596 AAF29378 O60427
AF226273 AAF70457 O60427
AF084558 AAG23120 O60427
AF271778 AAG44789 Q9H2H3
BC007846 AAH07846 O60427
DQ893822 ABM84748  
DQ890643 ABM92260  
AK027427 BAB55103 O60427
AK027522 BAB55173 O60427
AK074754 BAC11182 O60427
AK074819 BAC11229 O60427
AK222906 BAD96626 O60427
AK289552 BAF82241 A8K0I7
AK314199 BAG36877 O60427
AK096275 BAG53244 A8K0I7
AK298871 BAH12889 B7Z5F3
AL512760 CAC21679 O60427
AL834479 CAD39138 O60427

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens FADS1 NP_037534 M.musculus Fads1 76267 Gene Info NP_666206 89
R.norvegicus Fads1 84575   NP_445897 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)