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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ANKRD42, ankyrin repeat domain 42
Sequence ID:NM_182603
Entrez Gene ID:338699
Ensembl ID:ENSG00000137494

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q14.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 82905550 - 82960013

NM_182603 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14808290529082905769
4815608290952082909599
5616688291709982917206
6697888292134182921460
7899248292233682922471
92511258293589682936096
112612518293878882938913
125213578294744582947550
135815338295180082951975
153425628295898482960012

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4813915Full LengthBC045621ankyrin repeat domain 42
6622286IncompleteBC062729ankyrin repeat domain 42

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_872409  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_182603 NP_872409 Q8N9B4 Ank

Related Sequences

 
mRNAGenPeptSwissProt
BC045621 AAH45621 Q8N9B4
BC062729 AAH62729 Q6P5R7
DQ508934 ABF57994 A1XPJ1
DQ508815 ABF60230 A1XPJ0
EF041819 ABL09300 A1DRY3
AK095193 BAC04496 Q8N9B4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ANKRD42 NP_872409 R.norvegicus Ankrd42 293117   NP_001128485 84
M.musculus Ankrd42 73845 Gene Info NP_082941 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)