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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARAP1, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
Sequence ID:NM_001040118
NM_001135190
NM_015242
Entrez Gene ID:116985
Ensembl ID:ENSG00000186635

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 72396119 - 72433380

 Exon Info From UCSC:
NM_001040118
NM_001135190
NM_015242

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9021660Full LengthBC140792ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
9053090Full LengthBC144562ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
3161752IncompleteBC008315ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
4300162IncompleteBC021244centaurin, delta 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056057  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040118 NP_001035207 Q96P48  
NM_001135190 NP_001128662    
NM_015242 NP_056057 Q96P48 PH
RhoGAP
RA
ArfGap

Related Sequences

 
mRNAGenPeptSwissProt
BC008315 AAH08315 Q96P48
BC056401 AAH56401 Q96P48
BC140792 AAI40793 Q96P48
BC144562 AAI44563 B7ZMI2
AF411983 AAL04167 Q96P48
AY049732 AAL12169 Q96P48
AY553630 AAT36325 Q96P48
AB018325 BAA34502 Q96P48
AK160383 BAD18726 Q6ZMJ9
AJ621557 CAF21317 Q96P48

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARAP1 NP_001035207 M.musculus Arap1 69710 Gene Info NP_001035200 91
R.norvegicus Arap1 361617   XP_341896 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta