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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCS, copper chaperone for superoxide dismutase
Sequence ID:NM_005125
RefSeqGene ID:NG_008733
Entrez Gene ID:9973
Ensembl ID:ENSG00000173992

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 66360689 - 66373490

NM_005125 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1826636068966360770
831556636111266361184
1562936636658666366723
2944716636692966367106
4725326636795966368019
5336106637280966372886
6117146637295966373062
71510316637317266373488

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8144019Full LengthBC105016copper chaperone for superoxide dismutase
8327523Full LengthBC112055copper chaperone for superoxide dismutase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005116  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005125 NP_005116 O14618 Sod_Cu
HMA

Related Sequences

 
mRNAGenPeptSwissProt
AF002210 AAC51764 O14618
BC105016 AAI05017 O14618
BC112055 AAI12056 O14618
AY113179 AAM50090 Q8NEV0
CR541928 CAG46726 O14618

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCS NP_005116 M.musculus Ccs 12460 Gene Info NP_058588 87
R.norvegicus Ccs 84485   NP_445877 85
D.melanogaster CCS 46035   NP_652029 52
A.thaliana CCS 837808   NP_563910 44
A.gambiae AgaP_AGAP007026 1270080   XP_308747 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)