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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CAPN1, calpain 1, (mu/I) large subunit
Sequence ID:NM_001198868
NM_001198869
NM_005186
NR_040008
Entrez Gene ID:823
Ensembl ID:ENSG00000014216

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 64953402 - 64955150


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3347480Full LengthBC008751calpain 1, (mu/I) large subunit
3629894Full LengthBC017200calpain 1, (mu/I) large subunit
5223130Full LengthBC075862calpain 1, (mu/I) large subunit
4054775IncompleteBC015091calpain 1, (mu/I) large subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005177  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001198868 NP_001185797      
NM_001198869 NP_001185798      
NM_005186 NP_005177 P07384 EC 3.4.22.52 efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC008751 AAH08751 P07384 EC 3.4.22.52
BC017200 AAH17200 P07384 EC 3.4.22.52
BC075862 AAH75862 P07384 EC 3.4.22.52
AY550975 AAT52221 P07384 EC 3.4.22.52
DQ892905 ABM83831    
DQ896600 ABM87599    
AK315556 BAG37932 B2RDI5  
AK301538 BAG63037 B4DWH5  
X04366 CAA27881 P07384 EC 3.4.22.52

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPN1 NP_001185797 R.norvegicus Capn1 29153   NP_062025 89
M.musculus Capn1 12333 Gene Info NP_001103974 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta