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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SF1, splicing factor 1
Sequence ID:NM_001178030
NM_001178031
NM_004630
NM_201995
NM_201997
NM_201998
NR_033649
NR_033650
RefSeqGene ID:NG_021399
Entrez Gene ID:7536
Ensembl ID:ENSG00000168066

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 64533123 - 64545232

 Exon Info From UCSC:
NM_001178030
NM_001178031
NM_004630
NM_201995
NM_201997
NM_201998

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961666Full LengthBC008080splicing factor 1
2961666Full LengthBC008724splicing factor 1
4869292Full LengthBC020217splicing factor 1
5493676Full LengthBC038446splicing factor 1
3506879IncompleteBC000773splicing factor 1
4124268IncompleteBC011657splicing factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004621  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001178030 NP_001171501    
NM_001178031 NP_001171502    
NM_004630 NP_004621 Q15637 KH_1
NM_201995 NP_973724    
NM_201997 NP_973726 Q14820  
NM_201998 NP_973727    

Related Sequences

 
mRNAGenPeptSwissProt
L49345 AAB03514 Q15637
L49380 AAB04033 Q15637
BC000773 AAH00773 Q15637
BC008080 AAH08080 Q15637
BC008724 AAH08724 Q15637
BC020217 AAH20217 Q15637
BC038446 AAH38446 Q15637
EU832710 ACE87042  
EU832634 ACE87725  
D26120 BAA05116 Q15637
D26120 BAA05117 Q15637
D26121 BAA05118 Q14820
D26122 BAA05119 Q14821
AK296237 BAG58956 B4DJU4
AK299705 BAG61606 B4DSE4
AK301803 BAG63254 B4DX42
AK293753 BAH11587 B7Z1Q1
Y08765 CAA70018 Q15637
Y08766 CAA70019 Q15637

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SF1 NP_004621 M.musculus Sf1 22668 Gene Info NP_001104261 99
R.norvegicus Sf1 117855   NP_001104263 99
D.melanogaster SF1 43912   NP_524654 56
C.elegans sfa-1 178486   NP_503033 48
N.crassa NCU04110 3877430   XP_961266 45
S.pombe bpb1 2538832   NP_587871 42
S.cerevisiae MSL5 850807   NP_013217 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)