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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PHF21A, PHD finger protein 21A
Sequence ID:NM_001101802
NM_016621
Entrez Gene ID:51317
Ensembl ID:ENSG00000135365

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 45954116 - 46142729

 Exon Info From UCSC:
NM_001101802
NM_016621

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3908900Full LengthBC015714PHD finger protein 21A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057705  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001101802 NP_001095272 Q96BD5  
NM_016621 NP_057705   PHD

Related Sequences

 
mRNAGenPeptSwissProt
AF208848 AAF64262 Q96BD5
BC015714 AAH15714 Q96BD5
AY090777 AAM09095 Q96BD5
EU446805 ABZ92334  
AK021530 BAB13839 Q96BD5
AK023258 BAB14492 Q96BD5
AB051483 BAB21787 Q96BD5
BX648236 CAH10542 Q96BD5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PHF21A NP_057705 R.norvegicus Phf21a 362166   XP_342468 96
M.musculus Phf21a 192285 Gene Info NP_001103160 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)