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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CD44, CD44 molecule (Indian blood group)
Sequence ID:NM_000610
NM_001001389
NM_001001390
NM_001001391
NM_001001392
NM_001202555
NM_001202556
NM_001202557
RefSeqGene ID:NG_008937
Entrez Gene ID:960
Ensembl ID:ENSG00000026508

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 35252065 - 35253944

 Exon Info From UCSC:
NM_000610
NM_001001389
NM_001001390
NM_001001391
NM_001001392

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3638681Full LengthBC004372CD44 molecule (Indian blood group)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001389  NP_000601  NP_001001390  NP_001001392  NP_001001391  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000610 NP_000601 P16070 Xlink
NM_001001389 NP_001001389   Xlink
NM_001001390 NP_001001390   Xlink
NM_001001391 NP_001001391   Xlink
NM_001001392 NP_001001392   Xlink
NM_001202555 NP_001189484    
NM_001202556 NP_001189485    
NM_001202557 NP_001189486    

Related Sequences

 
mRNAGenPeptSwissProt
M24915 AAA35674 P16070
M25078 AAA36138 P16070
M59040 AAA51950 P16070
U40373 AAA82949 P16070
S66400 AAB27917 P16070
S66400 AAB27918 P16070
S66400 AAB27919 P16070
AF098641 AAC70782 P16070
S82326 AAD14389 Q99900
BC004372 AAH04372 P16070
BC052287 AAH52287 Q86UZ1
BC067348 AAH67348 P16070
AY101192 AAM50040 P16070
AY101193 AAM50041 P16070
EF581837 ABQ59315 P16070
FJ216964 ACI46596 P16070
D28447 BAA05813  
AK290424 BAF83113 A8K309
AK297776 BAG60121 B4DN59
AK304467 BAG65282 B4E2X0
X55150 CAA38951 P16070
X55938 CAA39404 P16070
X56794 CAA40133 P16070
X62739 CAA44602 P16070
X66733 CAA47271 P16070
AJ251595 CAB61878 P16070
AL832642 CAD89965 P16070

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CD44 NP_000601 R.norvegicus Cd44 25406   NP_037056 72
M.musculus Cd44 12505 Gene Info NP_033981 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta