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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARID3A, AT rich interactive domain 3A (BRIGHT-like)
Sequence ID:NM_005224
Entrez Gene ID:1820
Ensembl ID:ENSG00000116017

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 929328 - 972206

NM_005224 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
123926036926058
24658929261929895
659983932417932741
9841056960091960163
10571240964247964430
12411488964832965079
14891785966571966867
17861884968404968502
18852798971877972790

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30342057Full LengthBC060828AT rich interactive domain 3A (BRIGHT-like)
4543089IncompleteBC033163AT rich interactive domain 3A (BRIGHT-like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005224 NP_005215 Q99856 ARID

Related Sequences

 
mRNAGenPeptSwissProt
U88047 AAC32888 Q99856
BC033163 AAH33163 Q99856
BC060828 AAH60828 Q99856
AY152547 AAN74028 Q99856
AY845638 AAW30734 Q99856
EU446891 ABZ92420  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARID3A NP_005215 M.musculus Arid3a 13496 Gene Info NP_031906 83
R.norvegicus Arid3a 314616   NP_001101536 81

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)