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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. BTAF1, BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
Sequence ID:NM_003972
Entrez Gene ID:9044
Ensembl ID:ENSG00000095564

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 93726477 - 93790085

 Exon Info From UCSC:
NM_003972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8327669Full LengthBC112201BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
4424028IncompleteBC030273BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
4442919IncompleteBC047009BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)
5103407IncompleteBC029930BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003963  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003972 NP_003963 O14981 SNF2_N
Helicase_C
HEAT

Related Sequences

 
mRNAGenPeptSwissProt
AF038362 AAC04573 O14981
BC029930 AAH29930 Q8N6J1
BC030273 AAH30273 Q05C17
BC047009 AAH47009 Q6PI32
BC112201 AAI12202 Q2M1V9
AB208843 BAD92080 Q59HB6
AK303554 BAG64578 B4E0W6
AJ001017 CAA04475 O14981

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BTAF1 NP_003963 R.norvegicus Btaf1 368042   XP_347207 97
M.musculus Btaf1 107182 Gene Info NP_001074175 96
S.pombe mot1 2539633   NP_596080 62
A.gambiae AgaP_AGAP001820 1281292   XP_321235 50
D.melanogaster Hel89B 41943   NP_732097 50
A.thaliana RGD3 824595   NP_190996 45
N.crassa NCU07556 3874748   XP_958601 43
S.cerevisiae MOT1 856023   NP_015243 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)