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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCGF5, Polycomb group ring finger 5
Sequence ID:NM_032373
NM_001256549
NM_001257101
Entrez Gene ID:84333
Ensembl ID:ENSG00000180628

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q23.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 93041764 - 93044015

Transcript StartTranscript EndChromosomal Start Chromosomal End
12259298036892980592
2265209298244592982739
5216179300024093000336
6186739300826193008316
6747339300842193008480
7348829301104893011196
8839819302108293021180
98210719302418793024276
107211319303139493031453
113271269303802593044019

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5199133Full LengthBC051845polycomb group ring finger 5
5273745IncompleteBC044910polycomb group ring finger 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115749  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256549 NP_001243478    
NM_001257101 NP_001244030    
NM_032373 NP_115749 Q86SE9 zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
BC007377 AAH07377 Q86SE9
BC051845 AAH51845 Q86SE9
AK303014 BAH13878 Q86SE9
AL832003 CAD89905 Q86SE9
AL832496 CAD91165 Q86SE9
AM393626 CAL38502  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCGF5 NP_115749 M.musculus Pcgf5 76073 Gene Info NP_083784 97
R.norvegicus Pcgf5 681178   NP_001123354 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)